Variant.PhenomePlot

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Phenome Plot

The Variant.PhenomePlot (similar to a PheWAS Manhattan plot) view displays all phenotype associations for a single variant organized by association metadata on the x-axis and nlog10 PValue on the y-axis.

PhenomePlotOverviewresized.png

Select View

This view is available after performing a search for a single variant.

Variant.PhenomePlot.png

In GxL.Associations_B37 Land, for example, the default is to group association results by phenotype category (x-axis), which is derived from GRASP Paper Phenotype categories. The default grouping is controlled by PhenotypeGrouping config in the GeneticsLand Land.cfg file.

GRASPCategory.png

Data Details

To further explore, filter, or export the plotted data, navigate to the Curated Studies Table View:

SelectAssociationTable.png

Browseexportcuratedstudies.png

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