TextDumpLandData AllGenes.pdf

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[[Category:Updated in 2016]]
 
[[Category:Updated in 2016]]
 
[[Category:ArrayLand Download]]
 
[[Category:ArrayLand Download]]
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[[Category:Variable Set]]
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=Download Land Data For All Genes, For Selected Samples (Text Dump)=
 
=Download Land Data For All Genes, For Selected Samples (Text Dump)=
 
==Overview==
 
==Overview==
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*'''Land''': Select the Source Land to retrieve data from.
 
*'''Land''': Select the Source Land to retrieve data from.
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*'''VariableSet''': Specify a collection of columns (variableSet) or get none/all columns from sample meta data for '''all''' samples. Selected metadata will be downloaded in a local folder.
 
*'''Data types to Download''': Select the data type(s) to retrieve, as separate tab-delimited files.
 
*'''Data types to Download''': Select the data type(s) to retrieve, as separate tab-delimited files.
 
**'''Depending on the Land and samples, different data will be available.
 
**'''Depending on the Land and samples, different data will be available.
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** By default, a tab-delimited file containing one row per-gene, per-sample, will be retrieved, at the probeset/transcript level.
 
** By default, a tab-delimited file containing one row per-gene, per-sample, will be retrieved, at the probeset/transcript level.
 
** '''Gene level matrix data''': Users can also download a Samples X Gene matrix of the selected data.
 
** '''Gene level matrix data''': Users can also download a Samples X Gene matrix of the selected data.
** '''Full metadata''': Users can retrieve the full metadata matrix, for '''all''' samples.
 
 
* '''Output Folder''':Specify a local folder to store the text dump data.
 
* '''Output Folder''':Specify a local folder to store the text dump data.
 
{{BackToTop}}
 
{{BackToTop}}
 
==Output Results==
 
==Output Results==
In the specified output folder, separate files for each data type should be found:
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In the specified output folder, separate files for each data type and betadata (if selected) should be found:  
  
 
[[file:Land_TextDumpAllGenes_OutputFiles.png]]
 
[[file:Land_TextDumpAllGenes_OutputFiles.png]]

Latest revision as of 10:02, 10 February 2020


Contents

Download Land Data For All Genes, For Selected Samples (Text Dump)

Overview

Users can download tab-delimited data from Lands for all genes, for a set of samples. For example, the full set of expression data for a project in DiseaseLand can be retrieved, using the SampleIDs belonging to that project.

To download data for all genes, click Download | Download Sample Data To Text Files | Download Selected Samples Across All Genes:

Land TextDumpAllGenes Menu.png

Options

Land TextDumplAllGenes Window.png

  • Land: Select the Source Land to retrieve data from.
  • VariableSet: Specify a collection of columns (variableSet) or get none/all columns from sample meta data for all samples. Selected metadata will be downloaded in a local folder.
  • Data types to Download: Select the data type(s) to retrieve, as separate tab-delimited files.
    • Depending on the Land and samples, different data will be available.
  • Other Data
    • By default, a tab-delimited file containing one row per-gene, per-sample, will be retrieved, at the probeset/transcript level.
    • Gene level matrix data: Users can also download a Samples X Gene matrix of the selected data.
  • Output Folder:Specify a local folder to store the text dump data.
[back to top]

Output Results

In the specified output folder, separate files for each data type and betadata (if selected) should be found:

Land TextDumpAllGenes OutputFiles.png

EnvelopeLarge2.png

Related Articles

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