SentieonDnaSeqPipeline

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Begin SentieonDnaSeqPipeline /Namespace=NgsLib /RunOnServer=True;

Files

"/CloudFolderSupport/Users/lucy.williams/TestDataSets/C484.TCGA-06-0173-01A-01D-1491-08.5.1.fastq.gz

/CloudFolderSupport/Users/lucy.williams/TestDataSets/C484.TCGA-06-0173-01A-01D-1491-08.5.2.fastq.gz

/CloudFolderSupport/Users/lucy.williams/TestDataSets/C484.TCGA-06-0173-10B-01D-1491-08.5.1.fastq.gz

/CloudFolderSupport/Users/lucy.williams/TestDataSets/C484.TCGA-06-0173-10B-01D-1491-08.5.2.fastq.gz";

Reference Human.B37.3;

Haplotyper /emit_mode=gvcf;

Options /PairedEnd=True /OutputFolder="/CloudFolderSupport/Users/lucy.williams/Test_Output/Sentieon_Testing_DNAseq" /ImportSentieonResults=True /SentieonVersion=201808.01 /ThreadNumberPerJob=4 /ParallelJobNumber=50;

Output Test_SentieonDNASeq; End;

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Sentieon DNA Seq GUI