STAR on EScript
From Array Suite Wiki
Enable customers to run STAR on multiple fastq samples in parallel, on server, HPC, or AWS Cloud, resulting in a pair of OmicData objects in an OmicSoft Suite project.
Customer Workflow (via escript)
The above examples contain a fully functional flow on STAR alignment flow, on cloud, with docker.
The following environment preconditions have been set:
- AMI with docker V19.03.8: ami-012cb9a6d92521948
- Docker Image (Docker images don't require prerequisites)
A complete STAR flow requires the following steps:
- InstanceType: m4.4xlarge
- Additional Volume: 100GB
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Index output folder should contain:
STAR Index Output