RnaSeq Transcript.GeneVariable

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Shows the Gene RPKM (Reads Per Kilobase per Million mapped reads) for the specified gene, organized by group (e.g. Tumor Type).

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When visualizing more than one gene, each gene is shown in its own plot.

X-axis shows Gene RPKM. Y-axis shows the group.

Use the Sample Tab to further filter the data using any associated sample/subject meta data.

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Use Specify Profile (Task tab) to change the grouping.

Use Specify Split Column (Task tab) to change the automatic coloring.

Show Summary Information displays an on-the-fly p-value, indicating if the Gene RPKM is significantly changed, of selected group (and split column) using Show Summary Information (Task Tab | Customize). This is calculated by an F-test for One-way or Two-way ANOVA (depending on sample grouping).

RnaSeq Transcript.GeneVariable4.png

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