Recent Edited Articles

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2016 documentation improvement project

Drafts

-07/03/17: Using GeneticsLand
-04/13/17: SplitNgsFileByTag.pdf
-10/03/16: Quantile-Quantile plot (QQplot)

-08/10/16: NGS Copy Number Analysis Using OmicSoft
-01/21/16: Template:Draft
-11/04/15: Genetics SubsetPlinkBed.pdf

-04/19/13: Test

Needs Updating

-06/30/17: ProjectTableView
-06/30/17: ClinicalTableView
-06/30/17: TableView
-06/27/17: Table Correlation.pdf
-06/26/17: Region.AllSnpListing
-06/26/17: Region.CodingSnpListing
-06/26/17: Region.GeneListing
-06/26/17: Region.AssociationTable
-06/26/17: Gene.AssociationTable
-06/26/17: Variant.GenotypeFrequency
-06/26/17: Variant.SnpAnnotation

-06/26/17: Variant.SnpGenotypes
-06/26/17: Variant.VcfSnpGenotypes
-06/26/17: Variant.ArraySnpGenotypes
-06/26/17: Variant.ImputedSnpDoseGenotypes
-06/26/17: Variant.CovariateVariableView
-06/26/17: Variant.TimeSeriesView
-06/26/17: Variant.AssociationTable
-06/26/17: Variant.AlleleFrequency
-06/26/17: ClinicalTimeSeries
-06/26/17: ClinicalVariable
-06/26/17: ClinicalDistribution

-06/26/17: SampleDistribution
-06/24/17: Add GeneticsLand Custom Query.pdf
-05/25/17: Integration MicroArrayMicroArrayIntegration.pdf
-05/17/17: Trimming%
-05/15/17: Manage Sample Meta Data in Land
-05/15/17: IpaUpload.pdf
-05/04/17: Lists
-04/11/17: Manage SampleSet in ArrayLand
-03/09/17: Observation Tab
-03/09/17: Variable Tab
-10/17/16: Cnv SegmentCnv.pdf

Pending approval 2017

-07/21/17: A list of compiled genome and gene model from OmicSoft
-07/21/17: Land R API
-07/17/17: SpawnOffCommand
-07/12/17: Ngs SCPreprocess.pdf
-06/30/17: ManageGeneticsLandProjectAccessControl.pdf
-06/30/17: Manage Project MetaData
-06/26/17: Manage Association MetaData
-06/26/17: Restart ArrayServer in GUI
-06/21/17: Variable Metadata
-06/21/17: CuratedGWAS
-06/15/17: ManageProjects.Remove
-06/14/17: Ngs MapRnaSeqSingleCellReadsToGenome.pdf
-06/13/17: Preprocess of SingleCell RNA-Seq Data
-06/13/17: ManageUserGroups.UpdateMembers
-06/13/17: Genetics LoadPlinkPed.pdf
-06/13/17: Ngs SCFilterFastq.pdf
-06/12/17: ManageUsers.Remove
-06/12/17: ManageUsers.Update
-06/12/17: ManageUsers.Add
-06/12/17: Genetics GwasQCPipeline.pdf
-06/09/17: CopyPublishedProject
-06/09/17: IA FetchDataFromPublishedProject
-06/08/17: DownloadProject
-06/08/17: Table Reorder.pdf
-06/08/17: Ngs SC SummarizeTagQC.pdf

-06/08/17: Ngs MapRnaSeqSingleCellReadsToGenomeTags.pdf
-06/08/17: Genetics NormalizeSnpStrand.pdf
-06/06/17: IA SearchPublishedProjects
-06/02/17: Ngs ReportSingleCellCounts.pdf
-06/02/17: RPKM Transcript
-06/01/17: SC RegularExpressionExamples.pdf
-06/01/17: Open in Powerpoint Error Message
-05/31/17: ZeroInflated Pca.pdf
-05/31/17: SCRNA-Seq Analysis
-05/31/17: Ngs RemoveDuplicatesForSingleCell.pdf
-05/30/17: Subject
-05/26/17: User GenomeMark to bookmark regions in genome browser
-05/26/17: GenomeBrowerToolStrip.pdf
-05/25/17: Show MA Plot or XY Plot
-05/24/17: ImportZeroInflatedData.pdf
-05/18/17: Add List Membership To Table
-05/17/17: Cynomolgus Monkey Genome Built
-05/16/17: Ngs NgsSequenceDuplication.pdf
-05/15/17: NgsSequenceDuplication
-05/09/17: UpdateUserProfile.pdf
-04/28/17: Share Genome Browser.txt
-04/06/17: ManageGeneSets ExportGeneSets
-03/31/17: NormalizeNgsData.pdf
-03/24/17: Genome Browser Use Case: Access genome browser session via hyperlinks in an excel file
-03/24/17: R Integration

-03/23/17: Cloud error message: Runtime was not set up for cloud file
-03/16/17: ManageServerRScriptEngine.pdf
-03/13/17: Solution Explorer
-03/10/17: View Source
-03/09/17: View Controller
-03/02/17: UNMAPPED BAM
-02/23/17: Change Fill Properties
-02/23/17: Change Symbol Properties
-02/23/17: Change Line Properties
-02/23/17: Flip X/Y Axis
-02/22/17: Refresh design table with server metadata
-02/22/17: Design
-02/15/17: Land PublishCloudLand.pdf
-02/10/17: Manage Land filters
-02/08/17: Change resolution of exported images
-02/06/17: Gene.VcfSnpSummary
-02/06/17: OncoLand Case Study - Cox Model
-01/30/17: ManageGeneSets ImportGeneSets
-01/25/17: Gene.CodingSnpListing
-01/24/17: ManageGeneticsLandUserControl.pdf
-01/11/17: PRAD iCluster
-01/06/17: ContextType
-01/05/17: Getting Started With Single Cell Lands
-01/05/17: Set Time Series Scope

Finalized in 2017

-07/12/17: Ngs SCPreprocess.pdf
-06/15/17: Build ComparisonLand From Raw Data
-06/13/17: Preprocess of SingleCell RNA-Seq Data
-06/13/17: Ngs SCFilterFastq.pdf
-06/08/17: Ngs SC SummarizeTagQC.pdf
-06/08/17: Ngs MapRnaSeqSingleCellReadsToGenomeTags.pdf
-06/02/17: Ngs ReportSingleCellCounts.pdf

-06/02/17: ReportSingeCellGeneCounts
-06/01/17: SC RegularExpressionExamples.pdf
-05/31/17: ZeroInflated Pca.pdf
-05/31/17: Ngs RemoveDuplicatesForSingleCell.pdf
-05/05/17: RnaSeq Transcript.SurvivalView
-04/13/17: SplitNgsFileByTag.pdf
-04/07/17: Contrast Type

-03/14/17: Install R Packages for ArrayServer
-02/13/17: Gene.AllSnpListing
-01/09/17: Error Instance creation is not successful
-01/05/17: FilterTimeSeriesData.pdf
-01/05/17: ImportLongitudinalData.pdf

Pending approval 2016

-07/21/17: Land R API
-07/17/17: DESeq2Test.pdf
-07/03/17: Using GeneticsLand
-06/19/17: LandTools
-06/06/17: OneWayAnova.pdf
-05/22/17: RnaSeq Transcript.Heatmap
-05/22/17: Association.RegionPlot
-03/09/17: MicroArray VariableView
-03/07/17: DESeq2Test
-02/09/17: Customize Land View Visibility

-01/04/17: AnnotateVcfDataV2
-12/19/16: Array Viewer
-12/16/16: Alignment and read counts
-12/13/16: Preferences
-12/12/16: ExportItem
-12/12/16: Array Studio View Types
-12/09/16: GeneticsLand Overview
-11/29/16: Land ExportFromGxl.pdf
-11/07/16: EditCustomizedGridProperty
-10/31/16: TextDumpLandData AllGenes.pdf

-10/20/16: Steps to build AWS ArrayServer with cloud plugin
-10/19/16: RNASeqQCMetricsTable
-10/18/16: Open ArrayStudioLauncher with a link to content
-10/17/16: Annotate Variants in Array Studio
-10/17/16: Search
-10/17/16: SearchGxl
-10/13/16: ExportFromGxl
-10/10/16: SandBox
-02/29/16: DNASeqQCMetricsTable

Finalized in 2016

-07/20/17: Gene sets curated by OmicSoft from Land
-07/17/17: Getting Started
-06/30/17: ArrayServer.cfg
-06/28/17: Ngs RnaSeqPipeline.pdf
-06/26/17: Land PublishToGxl.pdf
-06/15/17: Create ComparisonLand from External Inference Reports
-06/15/17: Building Land From Raw Data
-06/15/17: Manage Land Sample Metadata
-06/15/17: Sample MetaData File
-06/13/17: Genetics LoadPlinkPed.pdf
-06/13/17: LoadPlinkPed
-06/12/17: Genetics GwasQCPipeline.pdf
-06/08/17: Table Reorder.pdf
-06/08/17: Genetics NormalizeSnpStrand.pdf
-06/07/17: GeneSetAnalysis
-06/06/17: TwoWayAnova.pdf
-06/06/17: OneWayAnova.pdf
-06/06/17: LinearModel.pdf
-06/06/17: Voom.pdf
-06/06/17: ExonLinearModel.pdf
-06/05/17: Table ColumnProperties.pdf
-06/02/17: Manage Sample Clinical Data
-06/01/17: RNA-Seq Normalized FPKM Values in Land
-05/26/17: ArrayStudio ClickOnce Launch in Mac
-05/18/17: ArrayServer folder mapping and management
-05/17/17: Cynomolgus Monkey Genome Built
-05/16/17: Ngs NgsSequenceDuplication.pdf
-05/11/17: RemapAssociationIDs
-05/09/17: UpdateUserProfile.pdf
-05/05/17: DownloadGEOData.pdf
-05/04/17: Ngs ReportGeneTranscriptCounts.pdf
-03/29/17: Activate Array Studio
-03/27/17: PanelID
-03/27/17: Venn Diagram
-03/16/17: ManageServerRScriptEngine.pdf
-03/16/17: AddTrackFromENCODE.pdf
-03/14/17: GeneSetAnalysis.pdf
-03/10/17: Normalize.pdf
-03/08/17: Land SummarizeSampleMutationCount.pdf
-02/28/17: Table Unstack.pdf
-02/24/17: Master Server and Analytic Server
-02/22/17: Plot Per-Gene Expression in a Sample to Compare GeneSets
-02/07/17: Ngs BuildGeneModel.pdf
-02/06/17: Table Summarize.pdf
-02/06/17: SurvivalTraitAssociation.pdf
-01/23/17: Ngs BuildReferenceLibrary.pdf
-01/23/17: Table Join.pdf
-01/04/17: AnnotateMutationV2
-01/03/17: AnnotateVariants.pdf
-01/03/17: Genetics GwasAssociationAnalysis.pdf

-01/03/17: BatmanTest.pdf
-12/14/16: Genetics PairwiseLD.pdf
-12/13/16: Color by Selected
-12/12/16: Reorder variables or observations in Microarray data
-12/12/16: Mask heatmap rows or columns
-12/12/16: Land DeleteLand.pdf
-12/12/16: Land PublishAlv.pdf
-12/12/16: Table VariableSelection.pdf
-12/12/16: Table AddColumnsFromTable.pdf
-12/04/16: Genetics GwasImputePipeline.pdf
-11/30/16: SummarizeTargetCoverage.pdf
-11/29/16: Ngs AnnotateMutationV2.pdf
-11/28/16: Sample Registration File
-11/23/16: How to remove land local cache
-11/22/16: Ngs BuildMutationAnnotator.pdf
-11/21/16: ServerDataMatrix.Virus.Variable
-11/18/16: Ngs SummarizeMutation2Snp.pdf
-11/14/16: SelectData.pdf
-11/09/16: ReportPairedEndFusionGenes.pdf
-10/31/16: Ngs FilterNgsFiles.pdf
-10/31/16: HierarchicalClustering.pdf
-10/27/16: Table Stack.pdf
-10/17/16: Ngs AnnotateVcfDataV2.pdf
-10/17/16: FilterNgsFiles
-10/17/16: Open selected sample in genome browser
-10/17/16: PairwiseCorrelation.pdf
-10/14/16: ManageGeneSets.pdf
-10/12/16: Land RemoveSamplesFromLand.pdf
-10/12/16: RnaSeqPipeline
-10/04/16: Comparison.VennDiagram
-10/04/16: Create Land
-09/20/16: SummarizeNgsCoverage.pdf
-09/13/16: BuildXenograftReferenceLibrary
-09/13/16: BuildXenograftGeneModel
-09/09/16: ComparisonLand Vector
-09/09/16: Comparison MetaData File
-09/09/16: Comparison Data File
-09/09/16: ArrayLand File Types
-09/09/16: ArrayLand Vector
-08/31/16: Sam.pdf
-08/25/16: Upload Files
-08/25/16: Manage Server Jobs
-08/25/16: Analytic Module Versions
-08/19/16: SearchableList.pdf
-08/18/16: Table TranslateRowIDs.pdf
-08/17/16: ServerDataMatrix.16SMicrobial.Variable
-08/15/16: Getting Started with RNAseq Analysis
-08/15/16: Getting Started with RT-PCR Analysis
-08/15/16: Getting Started with Microarray Analysis
-08/15/16: Getting Started with the Genome Browser

-08/15/16: Getting Started with DNAseq Analysis
-08/15/16: Getting Started with Copy Number Variation Analysis
-08/10/16: Manage Folder Mapping
-08/09/16: Table Sort.pdf
-08/09/16: Land RemoveAssociationsFromLand.pdf
-08/09/16: OutlierDetection.pdf
-08/09/16: OneGroupTest.pdf
-08/09/16: Table Merge.pdf
-08/09/16: ManageUsers.pdf
-08/09/16: Expose Script in GUI
-08/09/16: ExonArray Pca.pdf
-08/09/16: ServerListAnalysis.pdf
-08/09/16: Table Pca.pdf
-08/09/16: Table SummarizeMissingPattern.pdf
-08/09/16: Table EstimateDensity.pdf
-08/09/16: UserAuthorization
-08/05/16: ProportionLogisticRegressionModel.pdf
-08/04/16: ReportGeneTranscriptCounts
-08/02/16: OmicSoft BoxPlot
-08/02/16: Ftp connection can not be established between server and client after trying 100 rounds of multi-threaded ftp
-08/02/16: Filter for significant genes from multiple tests
-08/02/16: Align Ion Torrent reads
-08/02/16: CorrelateCovariate.pdf
-08/01/16: Table PropagateColumns.pdf
-08/01/16: Sma.pdf
-08/01/16: TwoWayNestedAnova.pdf
-08/01/16: FindNeighbor.pdf
-07/28/16: How to compile Alignment Report from bam.summary.txt file
-07/26/16: Table DeleteColumns.pdf
-07/26/16: Table CombineColumns.pdf
-07/26/16: Inference Report
-07/26/16: Table Cartesian.pdf
-07/26/16: Table ReorderColumns.pdf
-07/26/16: Table ReorderRows.pdf
-07/25/16: TwoGroupPermutationTest.pdf
-07/25/16: MicroArrayCategoricalTraitAssociation.pdf
-07/25/16: SummaryStatistics.pdf
-07/25/16: Table Split.pdf
-07/25/16: Table SelectList.pdf
-07/22/16: MultipleGroupTest.pdf
-07/22/16: PairedGroupTest.pdf
-07/21/16: RnaSeqQCMetrics.pdf
-07/20/16: Recover From Analysis With Error
-07/20/16: Table ParseColumn.pdf
-07/20/16: SummarizeInferenceReport.pdf
-07/20/16: RemoveAssociationsFromLand
-07/20/16: RemoveSamplesFromLand
-07/20/16: RemapSampleIDs
-07/19/16: TwoGroupTest.pdf
-07/18/16: Combine.pdf


All Recent Articles

-07/21/17: A list of compiled genome and gene model from OmicSoft
-07/21/17: Land R API
-07/20/17: Gene sets curated by OmicSoft from Land
-07/20/17: SmtpSenderEmail
-07/20/17: SmtpUser
-07/20/17: SmtpEnableSsl
-07/20/17: SmtpPassword
-07/20/17: SmtpServerPort
-07/20/17: SmtpServer
-07/18/17: DownloadComparisonLandData AllGenes.pdf
-07/18/17: Convert table to inference report
-07/17/17: DESeq2Test.pdf
-07/17/17: Getting Started
-07/17/17: SpawnOffCommand
-07/12/17: Ngs SCPreprocess.pdf
-07/12/17: AssociationDistribution
-07/11/17: FusionJunctionSequence

-07/11/17: Data Normalization
-07/10/17: Getting Started With OncoLand
-07/07/17: Typical way to update/restart ArrayServer
-07/06/17: Oshell
-07/03/17: Using GeneticsLand
-06/30/17: EnableGeneticsLandAccessLogging
-06/30/17: ArrayServer.cfg
-06/30/17: ProjectTableView
-06/30/17: ClinicalTableView
-06/30/17: TableView
-06/30/17: ManageGeneticsLandProjectAccessControl.pdf
-06/30/17: Manage Project MetaData
-06/30/17: ProjectDistribution
-06/29/17: AdminEmail
-06/29/17: DefaultProjectAccess
-06/29/17: DefaultProjectFrequencyAccess
-06/29/17: Ngs MapRnaSeqReadsToGenome.pdf

-06/28/17: Track Properties Alignment Track.txt
-06/28/17: Ngs MapDnaSeqReads.pdf
-06/28/17: Ngs RnaSeqPipeline.pdf
-06/28/17: FilePath
-06/27/17: Table Correlation.pdf
-06/26/17: Uninstall Array Studio
-06/26/17: MandatoryAssociationMetaDataColumns
-06/26/17: Land PublishToGxl.pdf
-06/26/17: Region.AllSnpListing
-06/26/17: Region.CodingSnpListing
-06/26/17: Region.GeneListing
-06/26/17: Region.AssociationTable
-06/26/17: Gene.AssociationTable
-06/26/17: Variant.GenotypeFrequency
-06/26/17: Variant.SnpAnnotation
-06/26/17: Variant.SnpGenotypes