Pre-built OmicSoft Ubuntu AMIs

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These AMIs are customized for on-demand cloud-based NGS analysis via OmicSoft Suite's "Server on the Cloud" add-on, to run with Amazon M4-class instances.

We recommend specifying one of the following latest Mono6-based AMIs within your ArrayServer.cfg Cloud Section, e.g.

Ami=ami-0bde320b171e25978
AmiSnapshot=snap-01721b011efb794bd

(replace the Ami and AmiSnapshot parameters based on your region, using the table below).

If you are installing or migrating a new OmicSoft Server installation, we recommend using our pre-built "OmicSoft Server" AMIs.

Contents

AMIs with AWS M5 Support

These AMIs are built on Amazon Linux 2 and support M5-class EC2 instances.

Date Created Region AMI Name AMI ID AMI Snapshot ID
9/2021 US-East-1 (Virginia) OfficialOshell_2021AmazonLinux2Mono6Dev3 ami-050314645361216ea snap-0354bd86f8afd9cc6
9/2021 US-West-1 (N. California) OfficialOshell_2021AmazonLinux2Mono6Dev3 ami-09c8d1cb2aad2d9c1 snap-0d3bb0eb5a020820c
9/2021 US-West-2 (Oregon) OfficialOshell_2021AmazonLinux2Mono6Dev3 ami-07a510609de9179bb snap-031e9f3a6cd88c926
9/2021 EU-West-1 (Ireland) OfficialOshell_2021AmazonLinux2Mono6Dev3 ami-0d0954d388d438062 snap-04be817b8122205c3
9/2021 EU-West-2 (London) OfficialOshell_2021AmazonLinux2Mono6Dev3 ami-0bb667eab6a7c00cb snap-0bd6256d13c196ac9
9/2021 EU-Central-1 (Frankfurt) OfficialOshell_2021AmazonLinux2Mono6Dev3 ami-09216f33b61ff2ca1 snap-0840ef08d058b7ff2
9/2021 AP-Northeast-1 (Tokyo) OfficialOshell_2021AmazonLinux2Mono6Dev3 ami-04e8df1b067a88b8d snap-0a43e9fb44d78cd9d
9/2021 AP-Southeast-2 (Sydney) OfficialOshell_2021AmazonLinux2Mono6Dev3 ami-0abc4cb1e9633c08b snap-099a6a570a794d82d

Mono6-based AMIs

These AMIs were built using the steps described on Building AWS AMI on Ubuntu 20 and mono 6 and are recommended for all OmicSoft Cloud users unless specifically instructed to use a different AMI, or you built your own AMI following the same instructions.

Date Created Region AMI Name AMI ID AMI Snapshot ID
6/2021 US-East-1 (Virginia) Oshell2021Ubuntu20Mono6_latest ami-05a7347f863981611 snap-0eabbc72359aad870
6/2021 US-West-1 (N. California) Oshell2021Ubuntu20Mono6_final ami-05c546faae126e219 snap-05d4ceb017415e1d7
6/2021 US-West-2 (Oregon) Oshell2021Ubuntu20Mono6_final ami-032ae2b3df61b9384 snap-0f29327959a876f8a
6/2021 EU-West-1 (Ireland) Oshell2021Ubuntu20Mono6_final ami-07d88f9dcb03913d4 snap-00608b1de6f30f7c5
6/2021 EU-West-2 (London) Oshell2021Ubuntu20Mono6_final ami-0dced0e67e0cab989 snap-0f34f977647220605
6/2021 AP-Southeast-2 (Sydney) Oshell2021Ubuntu20Mono6_final ami-057b418dc1d0b4887 snap-026d85d3cfd920907

Mono6-based AMIs for Oshell version 12

These AMIs were built for use with OmicSoft Suite 12, using the steps described on Building AWS AMI on Ubuntu 20 and mono 6.

Nov-21||US-East-1 (Virginia)||Oshell.V12-ue1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater||ami-03e02e22144957a9d||snap-0aad39149c7013cd3
Date Created Region AMI Name AMI ID AMI Snapshot ID
Nov-21 US-West-1 (N. California) Oshell.V12-uw1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater ami-0a36d2e85bb1e2235 snap-033c7138513dcad62
Nov-21 US-West-2 (Oregon) Oshell.V12-uw2-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater ami-0f211c1181570baa5 snap-01ead3b3bd0007a82
Nov-21 EU-West-1 (Ireland) Oshell.V12-ew1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater ami-00b3d2efb9ec6c137 snap-07fc42396b54cf8dd
Nov-21 EU-West-2 (London) Oshell.V12-ew2-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater ami-04e3391e5271fc793 snap-0fa2c0130462bf479
Nov-21 EU-Central-1 (Frankfurt) Oshell.V12-ec1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater ami-0b3322da03e6342b9 snap-0a6fc92f43c43dedb
Nov-21 AP-Northeast-1 (Tokyo) Oshell.V12-an1-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater ami-033923a713ea1057b snap-005c4997b20112261
Nov-21 AP-Southeast-2 (Sydney) Oshell.V12-as2-p-mono6-ubuntu20-20211014-OmicSoftServiceUpdater ami-0a6ddb0bfb769c523 snap-0dcc193de00e5597b

Mono4-based AMIs (previous generation)

AMIs using mono-4.0.4 are based on Ubuntu 14.04.3 LTS (GNU/Linux 3.13.0-74-generic x86_64) as backbone. If you do not find an AMI in your AWS region, please contact omicsoft.support@qiagen.com.

Date Created Region AMI Name AMI ID AMI Snapshot ID
4/2020 US-East-1 Oshell2020withMono4.0.4 ami-0bde320b171e25978 snap-01721b011efb794bd
4/2020 US-East-1 Oshell2020withMono4.8.1 ami-01a2919f9c6fff2cb snap-0d9cb6924b1e130c7
4/2020 US-West-1 Oshell2020withMono4.0.4 ami-09b5c06dcd12b190a snap-0650951ba18a68f83
4/2020 US-West-1 Oshell2020withMono4.8.1 ami-095b80125cd8e4c03 snap-0ba2b47d261458123
4/2020 US-West-2 Oshell2020withMono4.0.4 ami-050a064a08b49e7bf snap-075287deec40fcf0e
4/2020 US-West-2 Oshell2020withMono4.8.1 ami-006ed46e83f6bfe25 snap-0d4f5fa74e7d5a31e
4/2020 EU-West-1 Oshell2020withMono4.0.4 ami-09af150b0f74fb260 snap-099b7c18705243e27
4/2020 EU-West-1 Oshell2020withMono4.8.1 ami-0e3559d8de7ff5b86 snap-09cb49c1ff150ee32
4/2020 EU-West-2 Oshell2020withMono4.0.4 ami-0a6ebc7e541be7aa5 snap-060f49b2bad90cf8c
4/2020 EU-West-2 Oshell2020withMono4.8.1 ami-06a55cc91222acc71 snap-0e3df6c4624448e5c
4/2020 AP-Southeast-2 Oshell2020withMono4.0.4_a ami-015566a4be6e8b244 snap-00045baca8be526df
4/2020 AP-Southeast-2 Oshell2020withMono4.8.1 ami-06e88417c8b0c0e11 snap-0932b66a39d0dd7ae

Legacy OmicSoft AMIs

10/2017 US-East-1 OSUbuntuAMI201710 ami-773de00d snap-0997e3979b768dde3
10/2017 US-West-1 OSUbuntuAMI201710 ami-0368984103f05bd1a snap-00978cf8c6caba556
10/2017 EU-West-1 OSUbuntuAMI201710 ami-0a26fb58a407a19ac snap-063bdd16e950379d1
4/2017 US-East-1 OSUbuntuAMI201704 ami-5dbe2a4b snap-07a2e91f794c73678
5/2016 US-East-1 OSUbuntuAMI201605 ami-4033c32d snap-fe96391a
5/2016 US-West-1 OSUbuntuAMI201605 ami-60b5ce00 snap-f85d17de
5/2016 EU-West-2 OSUbuntuAMI201605 ami-1a44537e snap-0ab79d1ce89f6c736


AMI Build History

OSUbuntuAMI201605

Built in US-East-1, following instructions below.
Ami=ami-4033c32d

OSUbuntuAMI042017

built based on ami-4033c32d in 04/2017; fixed the ulimit issue for root user; only users running GATK may hit the issue without this fix.
Ami=ami-5dbe2a4b

OSUbuntu201710

built based on ami-5dbe2a4b in 10/2017; added basic python, R, and docker; updated OmicsoftUpdater to latest to have more DEV versions
Ami=ami-773de00d

Oshell2020WithMono4.0.4

built based on ami-773de00d; updated oshell to 10.1.3.3, added ENA support and updated Docker.

Oshell2020WithMono4.8.1

built base on ami-773de00d; updated oshell to 10.1.3.3, added ENA support, updated Docker, and added mono4.8.1 (in mono-4.0.4 directory); only use if cloud jobs occasionally crash unexpectedly.