--- Array Server Requirements...(76228) --- Aligned Data QC for RNA-Seq...(37378) --- MiRNA alignment and quantification...(32499) --- Genome browser alignment filters...(24901) --- Raw Data QC of RNA-Seq Data...(24724) --- Align Ion Torrent reads...(23617) --- Fusion strand and strands of fusion partners...(22755) --- Master Server and Analytic Server...(21130) --- Comparison.GeneSetAnalysis...(20094) --- ArrayStudio ClickOnce Launch in Mac...(18552) --- TPM and FPKM...(16494) --- How to use multiple sequence files for one sample?...(16384) --- Example of running 100 CCLE samples on cloud...(14323) --- Sort Profile in Land by Custom Order...(14297) --- Typical way to update/restart ArrayServer...(13353) --- Alignment and read counts...(13261) --- Setup ArrayServer in Cluster...(12817) --- How to resolve HRESULT 0x8007000B Error...(12545) --- OncoLand Case Study - SampleSets with Grouping...(12470) --- Hardware / Software requirements for Array Server...(12288) --- Alternative splicing check...(11463) --- Common ArrayStudio Launching Issues...(10969) --- OmicSoft Aligner Version 4 (OSA4) Benchmark...(10930) --- Visualization of RNA-Seq Aligned Data...(10774) --- What is Fold Change...(10564) --- Array Viewer Links...(10451) --- Annotate Variants in Array Studio...(10238) --- OncoLand Case Study - Summarize Mutation Count...(10043) --- Omicsoft Gene Model...(9934) --- Master and Analytic Servers...(9539) --- Import Expression Data...(9488) --- Steps to build AWS ArrayServer with cloud plugin...(9465) --- Plot Per-Gene Expression in a Sample to Compare GeneSets...(9460) --- OncoLand Case Study - Custom Query...(9346) --- Alternative splicing detection...(9277) --- Setting up ulimit for ArrayServer...(8854) --- Recover From Analysis With Error...(7699) --- Omicsoft RPKM/FPKM/Count values...(7639) --- Get out of memory error...(7430) --- OncoLand Case Study - Co-mutated Genes...(7430) --- Find a list of genes showing differential expression between two groups of samples...(7291) --- Generate copy number baseline for NGS data...(7097) --- OncoLand Case Studies...(6911) --- Genome Browser Sequence Legend...(6859) --- Reorder variables or observations in Microarray data...(6855) --- Frequently Asked Land Questions...(6650) --- Agilent CGH QC Metric...(6613) --- Gene sets curated by OmicSoft from Land...(6587) --- Logic to determine paired-end read files and sample name...(6122) --- RNA-Seq Normalized FPKM Values in Land...(6018) --- Omicsoft GenCode Gene Model...(5743) --- Ftp connection can not be established between server and client after trying 100 rounds of multi-threaded ftp...(5426) --- Mask heatmap rows or columns...(5254) --- Track Properties...(5217) --- Heatmap normalization...(5110) --- Array Studio IT Requirements...(4931) --- Installation Requirements For Array Studio...(4847) --- Isoform expression profile view in genome browser...(4817) --- User GenomeMark to bookmark regions in genome browser...(4726) --- How to compile Alignment Report from bam.summary.txt file...(4689) --- Charting error in Oshell or ArrayServer run...(4626) --- Error Instance creation is not successful...(4621) --- EnableAWSSpot...(4591) --- Transcirpt quantification is affected by positional bias...(4395) --- How Omicsoft calculated percentage values in alteration distribution plot in Land...(4387) --- OmicSoft BoxPlot...(4381) --- OncoLand Case Study - Clinical Variables...(4378) --- MultiplicityAdjustment...(4333) --- Check List for ArrayServer Migration...(4256) --- Factors that affect alignment time...(4231) --- How to highlight selected genes in a scatter plot in Array Studio...(4217) --- Getting started with Array Studio...(4191) --- How to make survival plots for sample categories defined by expression and/or mutations in OncoLand...(4131) --- How to remove land local cache...(4111) --- GeneBas.GenomeBrowser...(4021) --- NGS Copy Number Analysis Using OmicSoft...(3929) --- Multiple ways to add sampleset in Land...(3889) --- Different quality encoding...(3884) --- User Group Meeting 2017...(3826) --- Filter for significant genes from multiple tests...(3820) --- Convert inference report to MicroArray data...(3809) --- Open ArrayStudioLauncher with a link to content...(3700) --- ClinicalGroupAssociation...(3686) --- Generate and run OmicScript in ArrayStudio GUI...(3632) --- Error Can not connect to Omicsoft server for license checking and online streaming...(3589) --- How to install .NET 3.5 on Windows Server...(3578) --- Is Estimate the same as a fold change? If not, what is a Fold Change?...(3538) --- Create GeneSet From Synonyms...(3537) --- HTTP Error 500.19 0x8007007e...(3492) --- How to make survival plots for customized sample categories...(3481) --- Error for hash HashValidation...(3429) --- GCF...(3392) --- How can we avoid auto-updates that occur upon starting up ArrayStudio...(3342) --- Quantification in Strand Specific RNA-Seq dataset...(3338) --- Create a searchable shortcut to OmicSoft wiki...(3250) --- Difference between Summarize Mutation Data and Summarize VCF Data (SAMTools)...(3229) --- ODP setup for Windows ArrayServer using Oracle Database...(3219) --- Land normalization of expression data...(3192) --- Example .proxy file...(3182) --- CNV data preprocessing for Affymetrix SNP Array...(3150)
--- Setting Proxy For Omicsoft ArrayServer...(3134) --- Genome Browser Use Case: Access genome browser session via hyperlinks in an excel file...(3098) --- Control run or not for each Oscirpt block in the pipeline...(3089) --- Does Array Studio have a workflow for paired-end strand-specific RNA-seq?...(2934) --- Land Mutation Annotation from VariantClassifiers...(2921) --- How to export annotated mutation report in batch mode?...(2901) --- Cannot Start Mono Job Error...(2815) --- Compute copy number log2ratio values from Affymetrix SNP arrays...(2800) --- View Multiple Gene Regions...(2791) --- Expression of a gene set in Lands...(2768) --- In Land why I can see a few somatic mutations identified in normal or control samples...(2727) --- ArrayServer cannot get real time job log when running on the cluster...(2718) --- Errors related to bugs in Microsoft .Net framework 2.0...(2661) --- Database disk image is malformed...(2660) --- Refresh design table with server metadata...(2658) --- Example of seeting cluster parallel environment...(2644) --- Hardware/software requirements for LandExplorer...(2639) --- Maximum number of novel exon junctions...(2622) --- Error=Too many open files...(2600) --- OncoLand Case Study - Cox Model...(2549) --- Which columns will be indexed as masterid for search in ArrayServer...(2532) --- Order of samples and variables in hierarchical clustering...(2500) --- ClinicalVariable...(2479) --- What is the difference between Mutations and Somatic mutations Analysis?...(2463) --- I am getting the error "Application cannot be started" when I try to launch the webstart application...(2423) --- Trim UTRs by data in RNA-Seq Analysis...(2421) --- Common ArrayServer Issues...(2417) --- ClinicalDistribution...(2410) --- How is the quality score used in alignment?...(2380) --- Why count data are not integers from OmicSoft quantification...(2348) --- Survival view in analysis tab...(2346) --- CustomQueryOmicprintView...(2345) --- Omicsoft GenCode Gene ModelV27...(2339) --- What is the benefit of using the Sample Management System in Array Studio?...(2335) --- OncoLand Case Study - Differential Expression within and between Tumor Types...(2303) --- How do I find out what parameters were used for a particular workflow or used to generate a dataset or table?...(2258) --- Autofill web service...(2256) --- Restore Fastq Files From BAM...(2236) --- Bas and BAM files...(2211) --- Modify ArrayStudio ClickOnce Launch Link in Mac...(2200) --- Cannot create channel sink to connect to URL...(2172) --- Export Consensus Sequence...(2165) --- Land Explorer did not find any lands from your server...(2153) --- Error: Unable to read beyond the end of the stream...(2146) --- Libgdiplus complie error...(2121) --- "Could not find file" error...(2117) --- Multiple panels/views in Genome Browser...(2115) --- Search Read Name in Genome Browser...(2114) --- GeneDistribution...(2104) --- Values given in the column DbsnpCategory...(2096) --- Application validation did not succeed...(2095) --- Publish local project with NGS data...(2089) --- Data Details...(2017) --- Check multi-read mapping...(2013) --- View Integration: Measurement Data vs Gene Expression...(2007) --- How can I analyze NGS data on a list of customized region only...(2003) --- Naive Count For miRNA...(2002) --- Change resolution of exported images...(2001) --- How to check the installation and enable .NET 3.5 in Windows...(1999) --- Merge fusion report of individual runs or samples...(1997) --- Sharing project(s) using ArrayServer and ArrayViewer...(1979) --- Error during fastq-dump step in downloadSRA job...(1976) --- OmicsoftUpdater error SendFailure (Error writing headers)...(1969) --- Viewing novel exon junctions in the genome browser...(1962) --- ComparisonDistribution...(1950) --- The requested view cannot be retrieved from server...(1946) --- User Guides for Array Studio or Array Server...(1945) --- OncoLand Case Study - OncoGEO...(1941) --- Mageck Pscript demo.pdf...(1940) --- When shall RNA-Seq quantification results be transformed/normalized?...(1925) --- Include duplicate reads in DNA-Seq data...(1897) --- GSEA could not find buckets file...(1894) --- Grey zone in dendrogram (heatmap) after filtering...(1884) --- Getting downloading error when analyzing microarray data...(1882) --- How is gene model used in RNA-Seq alignment...(1875) --- Error: Invalid or corrupted data...(1865) --- Cloud error message: Not sufficient capacity in cloud...(1829) --- Understand Filter Ngs Files reports...(1821) --- Create and apply list filter to land views...(1818) --- Difference between "Map Reads to Genome (Illumina)" and "Map read to Genome (long reads)"...(1806) --- How is pair information used in RNA-Seq alignment...(1791) --- How can I connect data points from the same sample by lines in views?...(1755) --- PathwayDistribution...(1714) --- CustomQueryHistogramView...(1704) --- Http Link to ArrayLand Views...(1703) --- Benchmark ArrayStudio to RStudio.pdf...(1696) --- I am trying to normalize data using quantile normalization, but this doesn’t handle missing data. What is recommended?...(1691) --- How to save filters and filtered data...(1687) --- How to make RNA-Seq gene ID recognized by MicroArray modules...(1650) --- Interpret and visualize fusion report...(1647) --- Save Project After Each Important Step During Analysis...(1617) --- Error: Timeout exceeded while waiting for welcome message...(1611) --- How can I merge multiple projects into a single project in Array Studio?...(1581) --- DynamicCorrelation.Comparison Comparison...(1572) --- Tips In Setting Up Oshell...(1570) --- Revoke/unpublish a project from ArrayServer...(1568) --- Which columns will be indexed as ID for autofill in ArrayServer Search...(1563) --- Why I cannot zoom heatmap?...(1531) --- Cloud error message: Runtime was not set up for cloud file...(1529) --- Output all entries for a specific field...(1506)
Back to Omicsoft KnowledgeBase
--- FusionMap...(187009) --- Omicsoft KnowledgeBase...(153459) --- Tutorials...(138861) --- Online Help...(125762) --- ArrayServer.cfg...(110908) --- Oshell...(99948) --- LandTools...(95528) --- Server Online Help...(88767) --- ArrayLand Online Help...(85457) --- Array Server Requirements...(76228) --- OmicScript pipeline for RNA-Seq data analysis...(75761) --- Fusion gene detection in RNA-Seq...(60612) --- Genome Browser Online Help...(57356) --- Building Land From Raw Data...(47782) --- ArrayStudio Online Help...(46689) --- Running Array Server in Windows...(45510) --- ArrayLand Configuration Options...(45087) --- A list of compiled genome and gene model from OmicSoft...(44692) --- Best Practices...(40464) --- Land R API...(38627) --- RNA-Seq Getting Started Old...(37655) --- Aligned Data QC for RNA-Seq...(37378) --- ArrayServer Online Help...(37366) --- Sample Registration File...(36661) --- Ngs SummarizeMutation2Snp.pdf...(35529)
--- OSA...(34588) --- Build ComparisonLand From Raw Data...(33422) --- External Script Integration...(32665) --- MiRNA alignment and quantification...(32499) --- Getting Started with RNAseq Analysis...(32451) --- Build AWS Ubuntu AMI for OmicSoft Cloud Computing...(32256) --- Sample.template...(31801) --- GeneSetAnalysis.pdf...(31667) --- CuratedGWAS...(31053) --- User Guides...(28473) --- NormalizeNgsData.pdf...(28354) --- Ngs ReportGeneTranscriptCounts.pdf...(26806) --- GTT...(26285) --- Ngs RnaSeqPipeline.pdf...(25528) --- Genome browser alignment filters...(24901) --- Raw Data QC of RNA-Seq Data...(24724) --- Normalize.pdf...(24621) --- Ngs ReportExonCounts.pdf...(24475) --- MapRnaSeqReadsToGenome...(24373) --- DESeq2Test.pdf...(23771) --- Align Ion Torrent reads...(23617) --- Ngs AnnotateVcfData.pdf...(23356) --- Server Script...(23013) --- Fusion strand and strands of fusion partners...(22755) --- Getting Started With Server Analysis...(22508)