--- Array Server Requirements...(76228)
--- Aligned Data QC for RNA-Seq...(37378)
--- MiRNA alignment and quantification...(32499)
--- Genome browser alignment filters...(24901)
--- Raw Data QC of RNA-Seq Data...(24724)
--- Align Ion Torrent reads...(23617)
--- Fusion strand and strands of fusion partners...(22755)
--- Master Server and Analytic Server...(21130)
--- Comparison.GeneSetAnalysis...(20094)
--- ArrayStudio ClickOnce Launch in Mac...(18552)
--- TPM and FPKM...(16494)
--- How to use multiple sequence files for one sample?...(16384)
--- Example of running 100 CCLE samples on cloud...(14323)
--- Sort Profile in Land by Custom Order...(14297)
--- Typical way to update/restart ArrayServer...(13353)
--- Alignment and read counts...(13261)
--- Setup ArrayServer in Cluster...(12817)
--- How to resolve HRESULT 0x8007000B Error...(12545)
--- OncoLand Case Study - SampleSets with Grouping...(12470)
--- Hardware / Software requirements for Array Server...(12288)
--- Alternative splicing check...(11463)
--- Common ArrayStudio Launching Issues...(10969)
--- OmicSoft Aligner Version 4 (OSA4) Benchmark...(10930)
--- Visualization of RNA-Seq Aligned Data...(10774)
--- What is Fold Change...(10564)
--- Array Viewer Links...(10451)
--- Annotate Variants in Array Studio...(10238)
--- OncoLand Case Study - Summarize Mutation Count...(10043)
--- Omicsoft Gene Model...(9934)
--- Master and Analytic Servers...(9539)
--- Import Expression Data...(9488)
--- Steps to build AWS ArrayServer with cloud plugin...(9465)
--- Plot Per-Gene Expression in a Sample to Compare GeneSets...(9460)
--- OncoLand Case Study - Custom Query...(9346)
--- Alternative splicing detection...(9277)
--- Setting up ulimit for ArrayServer...(8854)
--- Recover From Analysis With Error...(7699)
--- Omicsoft RPKM/FPKM/Count values...(7639)
--- Get out of memory error...(7430)
--- OncoLand Case Study - Co-mutated Genes...(7430)
--- Find a list of genes showing differential expression between two groups of samples...(7291)
--- Generate copy number baseline for NGS data...(7097)
--- OncoLand Case Studies...(6911)
--- Genome Browser Sequence Legend...(6859)
--- Reorder variables or observations in Microarray data...(6855)
--- Frequently Asked Land Questions...(6650)
--- Agilent CGH QC Metric...(6613)
--- Gene sets curated by OmicSoft from Land...(6587)
--- Logic to determine paired-end read files and sample name...(6122)
--- RNA-Seq Normalized FPKM Values in Land...(6018)
--- Omicsoft GenCode Gene Model...(5743)
--- Ftp connection can not be established between server and client after trying 100 rounds of multi-threaded ftp...(5426)
--- Mask heatmap rows or columns...(5254)
--- Track Properties...(5217)
--- Heatmap normalization...(5110)
--- Array Studio IT Requirements...(4931)
--- Installation Requirements For Array Studio...(4847)
--- Isoform expression profile view in genome browser...(4817)
--- User GenomeMark to bookmark regions in genome browser...(4726)
--- How to compile Alignment Report from bam.summary.txt file...(4689)
--- Charting error in Oshell or ArrayServer run...(4626)
--- Error Instance creation is not successful...(4621)
--- EnableAWSSpot...(4591)
--- Transcirpt quantification is affected by positional bias...(4395)
--- How Omicsoft calculated percentage values in alteration distribution plot in Land...(4387)
--- OmicSoft BoxPlot...(4381)
--- OncoLand Case Study - Clinical Variables...(4378)
--- MultiplicityAdjustment...(4333)
--- Check List for ArrayServer Migration...(4256)
--- Factors that affect alignment time...(4231)
--- How to highlight selected genes in a scatter plot in Array Studio...(4217)
--- Getting started with Array Studio...(4191)
--- How to make survival plots for sample categories defined by expression and/or mutations in OncoLand...(4131)
--- How to remove land local cache...(4111)
--- GeneBas.GenomeBrowser...(4021)
--- NGS Copy Number Analysis Using OmicSoft...(3929)
--- Multiple ways to add sampleset in Land...(3889)
--- Different quality encoding...(3884)
--- User Group Meeting 2017...(3826)
--- Filter for significant genes from multiple tests...(3820)
--- Convert inference report to MicroArray data...(3809)
--- Open ArrayStudioLauncher with a link to content...(3700)
--- ClinicalGroupAssociation...(3686)
--- Generate and run OmicScript in ArrayStudio GUI...(3632)
--- Error Can not connect to Omicsoft server for license checking and online streaming...(3589)
--- How to install .NET 3.5 on Windows Server...(3578)
--- Is Estimate the same as a fold change? If not, what is a Fold Change?...(3538)
--- Create GeneSet From Synonyms...(3537)
--- HTTP Error 500.19 0x8007007e...(3492)
--- How to make survival plots for customized sample categories...(3481)
--- Error for hash HashValidation...(3429)
--- GCF...(3392)
--- How can we avoid auto-updates that occur upon starting up ArrayStudio...(3342)
--- Quantification in Strand Specific RNA-Seq dataset...(3338)
--- Create a searchable shortcut to OmicSoft wiki...(3250)
--- Difference between Summarize Mutation Data and Summarize VCF Data (SAMTools)...(3229)
--- ODP setup for Windows ArrayServer using Oracle Database...(3219)
--- Land normalization of expression data...(3192)
--- Example .proxy file...(3182)
--- CNV data preprocessing for Affymetrix SNP Array...(3150)

--- Setting Proxy For Omicsoft ArrayServer...(3134)
--- Genome Browser Use Case: Access genome browser session via hyperlinks in an excel file...(3098)
--- Control run or not for each Oscirpt block in the pipeline...(3089)
--- Does Array Studio have a workflow for paired-end strand-specific RNA-seq?...(2934)
--- Land Mutation Annotation from VariantClassifiers...(2921)
--- How to export annotated mutation report in batch mode?...(2901)
--- Cannot Start Mono Job Error...(2815)
--- Compute copy number log2ratio values from Affymetrix SNP arrays...(2800)
--- View Multiple Gene Regions...(2791)
--- Expression of a gene set in Lands...(2768)
--- In Land why I can see a few somatic mutations identified in normal or control samples...(2727)
--- ArrayServer cannot get real time job log when running on the cluster...(2718)
--- Errors related to bugs in Microsoft .Net framework 2.0...(2661)
--- Database disk image is malformed...(2660)
--- Refresh design table with server metadata...(2658)
--- Example of seeting cluster parallel environment...(2644)
--- Hardware/software requirements for LandExplorer...(2639)
--- Maximum number of novel exon junctions...(2622)
--- Error=Too many open files...(2600)
--- OncoLand Case Study - Cox Model...(2549)
--- Which columns will be indexed as masterid for search in ArrayServer...(2532)
--- Order of samples and variables in hierarchical clustering...(2500)
--- ClinicalVariable...(2479)
--- What is the difference between Mutations and Somatic mutations Analysis?...(2463)
--- I am getting the error "Application cannot be started" when I try to launch the webstart application...(2423)
--- Trim UTRs by data in RNA-Seq Analysis...(2421)
--- Common ArrayServer Issues...(2417)
--- ClinicalDistribution...(2410)
--- How is the quality score used in alignment?...(2380)
--- Why count data are not integers from OmicSoft quantification...(2348)
--- Survival view in analysis tab...(2346)
--- CustomQueryOmicprintView...(2345)
--- Omicsoft GenCode Gene ModelV27...(2339)
--- What is the benefit of using the Sample Management System in Array Studio?...(2335)
--- OncoLand Case Study - Differential Expression within and between Tumor Types...(2303)
--- How do I find out what parameters were used for a particular workflow or used to generate a dataset or table?...(2258)
--- Autofill web service...(2256)
--- Restore Fastq Files From BAM...(2236)
--- Bas and BAM files...(2211)
--- Modify ArrayStudio ClickOnce Launch Link in Mac...(2200)
--- Cannot create channel sink to connect to URL...(2172)
--- Export Consensus Sequence...(2165)
--- Land Explorer did not find any lands from your server...(2153)
--- Error: Unable to read beyond the end of the stream...(2146)
--- Libgdiplus complie error...(2121)
--- "Could not find file" error...(2117)
--- Multiple panels/views in Genome Browser...(2115)
--- Search Read Name in Genome Browser...(2114)
--- GeneDistribution...(2104)
--- Values given in the column DbsnpCategory...(2096)
--- Application validation did not succeed...(2095)
--- Publish local project with NGS data...(2089)
--- Data Details...(2017)
--- Check multi-read mapping...(2013)
--- View Integration: Measurement Data vs Gene Expression...(2007)
--- How can I analyze NGS data on a list of customized region only...(2003)
--- Naive Count For miRNA...(2002)
--- Change resolution of exported images...(2001)
--- How to check the installation and enable .NET 3.5 in Windows...(1999)
--- Merge fusion report of individual runs or samples...(1997)
--- Sharing project(s) using ArrayServer and ArrayViewer...(1979)
--- Error during fastq-dump step in downloadSRA job...(1976)
--- OmicsoftUpdater error SendFailure (Error writing headers)...(1969)
--- Viewing novel exon junctions in the genome browser...(1962)
--- ComparisonDistribution...(1950)
--- The requested view cannot be retrieved from server...(1946)
--- User Guides for Array Studio or Array Server...(1945)
--- OncoLand Case Study - OncoGEO...(1941)
--- Mageck Pscript demo.pdf...(1940)
--- When shall RNA-Seq quantification results be transformed/normalized?...(1925)
--- Include duplicate reads in DNA-Seq data...(1897)
--- GSEA could not find buckets file...(1894)
--- Grey zone in dendrogram (heatmap) after filtering...(1884)
--- Getting downloading error when analyzing microarray data...(1882)
--- How is gene model used in RNA-Seq alignment...(1875)
--- Error: Invalid or corrupted data...(1865)
--- Cloud error message: Not sufficient capacity in cloud...(1829)
--- Understand Filter Ngs Files reports...(1821)
--- Create and apply list filter to land views...(1818)
--- Difference between "Map Reads to Genome (Illumina)" and "Map read to Genome (long reads)"...(1806)
--- How is pair information used in RNA-Seq alignment...(1791)
--- How can I connect data points from the same sample by lines in views?...(1755)
--- PathwayDistribution...(1714)
--- CustomQueryHistogramView...(1704)
--- Http Link to ArrayLand Views...(1703)
--- Benchmark ArrayStudio to RStudio.pdf...(1696)
--- I am trying to normalize data using quantile normalization, but this doesn’t handle missing data. What is recommended?...(1691)
--- How to save filters and filtered data...(1687)
--- How to make RNA-Seq gene ID recognized by MicroArray modules...(1650)
--- Interpret and visualize fusion report...(1647)
--- Save Project After Each Important Step During Analysis...(1617)
--- Error: Timeout exceeded while waiting for welcome message...(1611)
--- How can I merge multiple projects into a single project in Array Studio?...(1581)
--- DynamicCorrelation.Comparison Comparison...(1572)
--- Tips In Setting Up Oshell...(1570)
--- Revoke/unpublish a project from ArrayServer...(1568)
--- Which columns will be indexed as ID for autofill in ArrayServer Search...(1563)
--- Why I cannot zoom heatmap?...(1531)
--- Cloud error message: Runtime was not set up for cloud file...(1529)
--- Output all entries for a specific field...(1506)

--- FusionMap...(187009)
--- Omicsoft KnowledgeBase...(153459)
--- Tutorials...(138861)
--- Online Help...(125762)
--- ArrayServer.cfg...(110908)
--- Oshell...(99948)
--- LandTools...(95528)
--- Server Online Help...(88767)
--- ArrayLand Online Help...(85457)
--- Array Server Requirements...(76228)
--- OmicScript pipeline for RNA-Seq data analysis...(75761)
--- Fusion gene detection in RNA-Seq...(60612)
--- Genome Browser Online Help...(57356)
--- Building Land From Raw Data...(47782)
--- ArrayStudio Online Help...(46689)
--- Running Array Server in Windows...(45510)
--- ArrayLand Configuration Options...(45087)
--- A list of compiled genome and gene model from OmicSoft...(44692)
--- Best Practices...(40464)
--- Land R API...(38627)
--- RNA-Seq Getting Started Old...(37655)
--- Aligned Data QC for RNA-Seq...(37378)
--- ArrayServer Online Help...(37366)
--- Sample Registration File...(36661)
--- Ngs SummarizeMutation2Snp.pdf...(35529)

--- OSA...(34588)
--- Build ComparisonLand From Raw Data...(33422)
--- External Script Integration...(32665)
--- MiRNA alignment and quantification...(32499)
--- Getting Started with RNAseq Analysis...(32451)
--- Build AWS Ubuntu AMI for OmicSoft Cloud Computing...(32256)
--- Sample.template...(31801)
--- GeneSetAnalysis.pdf...(31667)
--- CuratedGWAS...(31053)
--- User Guides...(28473)
--- NormalizeNgsData.pdf...(28354)
--- Ngs ReportGeneTranscriptCounts.pdf...(26806)
--- GTT...(26285)
--- Ngs RnaSeqPipeline.pdf...(25528)
--- Genome browser alignment filters...(24901)
--- Raw Data QC of RNA-Seq Data...(24724)
--- Normalize.pdf...(24621)
--- Ngs ReportExonCounts.pdf...(24475)
--- MapRnaSeqReadsToGenome...(24373)
--- DESeq2Test.pdf...(23771)
--- Align Ion Torrent reads...(23617)
--- Ngs AnnotateVcfData.pdf...(23356)
--- Server Script...(23013)
--- Fusion strand and strands of fusion partners...(22755)
--- Getting Started With Server Analysis...(22508)