NGS Copy Number Analysis Using OmicSoft
From Array Suite Wiki
Copy number analysis has been widely used in oncology studies, based on SNP, CGH, genotyping array and sequencing techniques. Omicsoft provide analytic functions for CN analysis.
You can find tutorials for Array- and NGS-based CNV analysis here, including video series walking through the steps of importing data, summarizing and segmenting CNV data, and visualizing the data in Array Studio and the Genome Browser.