Interpret and visualize fusion report

From Array Suite Wiki

Jump to: navigation, search


When fusion detection is applied to multiple NGS datasets in a single run. It provides an easy way to detecting recurrent fusion events by grouping fusion junctions by rows in one table. Each sample will have three value columns:

  1. UniqueCuttingPositionCount
  2. SeedCount
  3. RescuedCount

Converting the fusion report to MicroArray data within Array Studio can help better interpret and visualize it.

FusionConvert 20130619.png


Select value columns as data and all others as annotation.

FusionConvert 2 20130619.png


Then you will get an OmicData

FusionConvert 3 20130619.png


You can add variableView on this data, right click on the OmicData | add View | Variable View:

FusionConvert 4 20130619.png