InstanceType

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For Array Server with Cloud configuration, set any InstanceType for each analysis. By default it is using OAlignInstanceType and OSummaryInstanceType set in ArrayServer.cfg

Example with c4.2xlarge but user can choose other instance too:

Begin RnaSeqPipeline /Namespace=NgsLib /RunOnServer=True;
Files
"/CloudFolderEast/_FASTQ/RNASEQ/Test200PE_1.fastq.gz
/CloudFolderEast/_FASTQ/RNASEQ/Test200PE_2.fastq.gz
/CloudFolderEast/_FASTQ/RNASEQ/Test400PE_1.fastq.gz
/CloudFolderEast/_FASTQ/RNASEQ/Test400PE_2.fastq.gz";
Reference Human.B37.3;
GeneModel OmicsoftGene20130723;
NgsQCWizard /Run=True;
FilterNgsFiles /Run=True;
FilterSource IlluminaAdapters,Ercc,Human.rRNA,Human.tRNA;
Count /Run=True /AutoTrimUtr=False;
RnaSeqQCMetrics /Run=True;
SummarizeExonJunction /Run=True;
SummarizeMutation2Snp /Run=True;
CombinedFusionAnalysis /Run=True;
PairedEndFusionAnalysis /Run=True;
GenerateBas /Run=True;
GenerateLandAlv /Run=True;
Options /ParallelJobNumber=50 /ThreadNumberPerJob=4 /PairedEnd=True /FileFormat=AUTO 
/OutputFolder="/CloudFolderEast/_Users/gary/Test/Test0721" /CompressionMethod=Gzip /Gzip=True 
/Replace=False /SubnetID=subnet-b569b9c2 /InstanceType=c4.2xlarge;
Output TestOthers;
End;


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