How genes are prioritized in mutation annotation

From Array Suite Wiki

Jump to: navigation, search

When multiple genes are affected by a single variant, the Variant Annotation table will still report one "affected gene". The following logic is used to prioritize variants by affected gene feature (from high- to low-priority):

  1. Stop codon
  2. Splice Site
  3. Exon Coding
  4. Exon non-coding
  5. 5' UTR
  6. 3' UTR
  7. Intron
  8. Intergenic