Format

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Import formats

Used to specify the import of a table file:

Options include:

  1. Xls - excel file
  2. Csv - comma delimited file
  3. Sas - SAS data file (requires installation of SAS--not included with Omicsoft software)
  4. SasTxt - SAS text file
  5. Txt - tab delimited file
  6. Gtf - gene model file (for annotation importing)
  7. MultipleTab - used for importing multiple tab-delimited files at the same time. Must be used in conjunction with Files instead of File

Export formats

Also used to specify export formats:

  1. Obj - Omicsoft object file
  2. Xls - Excel file
  3. Csv - comma delimited file
  4. Txt - tab delimited file

NGS Export formats

  1. SAM
  2. BAM
  3. COMPRESSED BAM or COMPRESSEDBAM or CBAM
  4. FASTQ
  5. FASTA or FA
  6. EXPORT2 (MAPPED + UNMAPPED)
  7. EXPORT3 (PAIRED + UNPAIRED + UNMAPPED)
  8. BED
  9. SOAP
  10. UNMAPPED
  11. FASTQ_PAIRED
  12. UNMAPPED_PAIRED
  13. MAPPED_PAIRED
  14. FASTQ_GZ (recommended in most cases as it exports single, paired end, etc. in gzip format)