ENCODE Enhancers and Promoters

From Array Suite Wiki

(Difference between revisions)
Jump to: navigation, search
Joseph (Talk | contribs)
(Created page with "These annotations indicate which Enhancer- and Promoter-like regions were identified by ENCODE: * EnhancerLikeRegions_immortalized_cell_line_Files * EnhancerLikeRegions_in_vi...")

Latest revision as of 21:27, 14 January 2020

These annotations indicate which Enhancer- and Promoter-like regions were identified by ENCODE:

  • EnhancerLikeRegions_immortalized_cell_line_Files
  • EnhancerLikeRegions_in_vitro_differentiated_cells_Files
  • EnhancerLikeRegions_induced_pluripotent_stem_cell_line_Files
  • EnhancerLikeRegions_primary_cell_Files
  • EnhancerLikeRegions_stem_cell_Files
  • EnhancerLikeRegions_tissue_Files
  • PromoterLikeRegions_immortalized_cell_line_Files
  • PromoterLikeRegions_in_vitro_differentiated_cells_Files
  • PromoterLikeRegions_induced_pluripotent_stem_cell_line_Files
  • PromoterLikeRegions_primary_cell_Files
  • PromoterLikeRegions_stem_cell_Files
  • PromoterLikeRegions_tissue_Files


The current classifier versions (for specifying in Land.cfg) are:

EnhancerLikeRegions_immortalized_cell_line_20170501.osrc
EnhancerLikeRegions_in_vitro_differentiated_cells_20170501.osrc
EnhancerLikeRegions_induced_pluripotent_stem_cell_line_20170501.osrc
EnhancerLikeRegions_primary_cell_20170501.osrc
EnhancerLikeRegions_stem_cell_20170501.osrc
EnhancerLikeRegions_tissue_20170501.osrc
PromoterLikeRegions_immortalized_cell_line_20170501.osrc
PromoterLikeRegions_in_vitro_differentiated_cells_20170501.osrc
PromoterLikeRegions_induced_pluripotent_stem_cell_line_20170501.osrc
PromoterLikeRegions_primary_cell_20170501.osrc
PromoterLikeRegions_stem_cell_20170501.osrc
PromoterLikeRegions_tissue_20170501.osrc