From Array Suite Wiki
After users create ComparisonSets in Land, Data can be compared for that comparison across all genes. Users must first create and open a local project in the Analysis tab. Comparisons are chosen from Load from comparison set and the user can optionally name the output file:
There are three types of data that the user can download:
1) Original: This will display the data (Log2 Fold change, raw and adjusted pvalue) for all genes for the samples contained within the comparison.
2) Gene level or matrix data: This will generate an Omic Data data type in the analysis that will show design and annotation tables for the experiments within the comparison set.
3) Full meta data: This will output all metadata related to the comparisons in the selected land (not limited to comparison set).
Users are now able to compare these data sets with their own analyses/other data, as well as generate additional views as described in Convert table to inference report.