Comparison.DiseaseVSNormal.Heatmap

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(Created page with " Comparison Heatmap View heatmap Shows a heatmap view comparing the RNA-Seq RPKM data between Disease and Normal for two or more genes. Heatmap view.jpg For a list of genes...")
 
 
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Shows a heatmap view comparing the RNA-Seq RPKM data between Disease and Normal for two or more genes.
 
Shows a heatmap view comparing the RNA-Seq RPKM data between Disease and Normal for two or more genes.
 
Heatmap view.jpg
 
  
 
For a list of genes, the x-axis will be the samples, while the y-axis will be the average expression ratio between case and control (disease and normal).
 
For a list of genes, the x-axis will be the samples, while the y-axis will be the average expression ratio between case and control (disease and normal).
 
color legend
 
color legend
 
Color legend.jpg
 
  
 
For each cell in the heatmap, red denotes positive ratio between disease and normal, while green denotes negative ratio.
 
For each cell in the heatmap, red denotes positive ratio between disease and normal, while green denotes negative ratio.
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By clicking a cell on the heatmap, we could see detail information about the comparison and project for that gene.
 
By clicking a cell on the heatmap, we could see detail information about the comparison and project for that gene.
 
Project meta.jpg
 
  
  
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The expression ratios shown on the heatmap have been log_2 transformed first, and then computed the ratio of the mean values of expressions between two comparison categories.
 
The expression ratios shown on the heatmap have been log_2 transformed first, and then computed the ratio of the mean values of expressions between two comparison categories.
 
As shown in the snapshot below, the ratio for gene EEA1 was calculated between Kidney Cancer and Focal Segmental Glomerulosclerosis.
 
 
Heatmap comparison.jpg
 
  
 
[[Category:Lands]
 
[[Category:Lands]

Latest revision as of 22:25, 14 January 2020

Comparison Heatmap View

heatmap

Shows a heatmap view comparing the RNA-Seq RPKM data between Disease and Normal for two or more genes.

For a list of genes, the x-axis will be the samples, while the y-axis will be the average expression ratio between case and control (disease and normal). color legend

For each cell in the heatmap, red denotes positive ratio between disease and normal, while green denotes negative ratio. Project Meta comparison and project meta

By clicking a cell on the heatmap, we could see detail information about the comparison and project for that gene.


heatmap scale and transformation detail

The expression ratios shown on the heatmap have been log_2 transformed first, and then computed the ratio of the mean values of expressions between two comparison categories.

[[Category:Lands]