CellLine Pfizer B37

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CellLine Pfizer B37

Pfizer molecular data for cell lines combines data from Pfizer, Wyeth Breast Cancer and the Wyeth NCI50 subset of the NCI60 cell lines.

Land Version Genome Build Gene Model
CellLine_Pfizer_B37 Human.B37.3 OmicsoftGene20130723

Data Source

Data source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE34211

Data Types

  • CNV (SNP6)
  • Expression Intensity Probes (Affymetrix)

Laboratory Methods

  • Affymetrix Expression Array

Processing Methods

Expression Data: Omicsoft Affymetrix Microarray Preprocessing

Key Meta Data Columns

  • Primary Site: The body site where the cell line sample is derived from.
  • Histology: Histological types of cancer, such as carcinoma, glioma and sarcoma.
  • Land Tissue: The tissue from which the cell line was derived, using OmicSoft's curation Controlled Vocabulary
  • Land Sample Type: A detailed description of the cell type from which the cell line was derived, using OmicSoft's curation Controlled Vocabulary
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Primary Grouping

Primary Site

Sample Distribution by Primary Site

Primary site Pfizer.png

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Key Views

Gene Expression

One of the most common ways to visualize gene expression data is a per-sample Scatter plot (Expression View), with each sample grouped by Primary Site on the Y-axis, and expression level plotted on the X-axis:

BrafExpressionPfizerNCI.png

Expression profile of BRAF.

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Copy Number Variation

Copy number data can be visualized for a gene of interest, grouped by any metadata column, such as Histology.

Copy number Pfizer.png

Copy Number Log2 Ratio For BFAF, grouped by histology type

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