CellLine GSK B37

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CellLine GSK B37

GSK Cancer Cell Line Genomic Profiling Data (Wooster dataset)

Land Version Genome Build Gene Model
CellLine_GSK_B37 Human.B37.3 OmicsoftGene20130723

Data Source

Data source: https://cbiit.cancer.gov/ncip/biomedical-informatics-resources/data#caarraydataportal

Data Types

  • CNV (SNP6)
  • Expression Intensity Probes (Affymetrix)

Laboratory Methods

  • Affymetrix Expression Array

Processing Methods

Expression Data: Omicsoft Affymetrix Microarray Preprocessing

Key Meta Data Columns

  • Primary Site: The body site where the cell line sample is derived from.
  • Histology: Histological types of cancer, such as carcinoma, glioma and sarcoma.
  • Land Tissue: The tissue from which the cell line was derived, using OmicSoft's curation Controlled Vocabulary
  • Land Sample Type: A detailed description of the cell type from which the cell line was derived, using OmicSoft's curation Controlled Vocabulary
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Primary Grouping

Primary Site

Sample Distribution by Primary Site

Primary site GSK.png

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Key Views

Gene Expression

One of the most common ways to visualize gene expression data is a per-sample Scatter plot (Expression View), with each sample grouped by Primary Site on the Y-axis, and expression level plotted on the X-axis:

Fgf2ExpressionGSK.png

Expression profile of FGF2.

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Copy Number Variation

Copy number data can be visualized for a gene of interest, grouped by any metadata column, such as Histology.

Copy number GSK.png

Copy Number Log2 Ratio For FGF2, grouped by histology type

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